Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggttctcgatgcgcagttgcactgtaacgtgttgcatatggtcatgatttaataggaaaaccaatgctgttttccttacgagagcttgtttcgtttatgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G55440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55440.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 5'ss of exon 5
ATCGGGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggttctcgat-gcgcagttgcactg----taacgtgttgcatatggtcatgatttaataggaaaaccaatgctgttttccttacgagagcttgtttcgtttatgaacag--------------------------------------------------------------
|   | |  |  | ||| | ||||||||  | || ||||||||||| ||||||||||||||||| ||||| || | ||| || || ||||| || |||     |     || | ||| || ||       || | |||| | | |     | || |       ||||||||   | |||  |  | | | ||  | || ||  ||| |                                                                
AGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGgtattccttctaacatagagcaattacatcacgattagcatgttccct-tcacatttatctgcctcataaaccaatatgggttttttc-ctatatctaatgtctttcttgaccgatgcctggtacctgattctgcaattctgttcattcgaattatttgaaatatgcatgacattag

upper sequence: AT3G55440.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv13s0019g01090.t01 (Vitis vinifera), 5'ss of exon 6
ATCGGGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggttctcgatgcgcagttgcactgtaacgtgttgcatatggtcatgatttaataggaaaaccaatgctgttttccttacgagagcttgtttcgtttatgaacag
||  |||  |||| ||| | ||||||||| |||||||||| || |||||||| |||||||| || ||||| ||||  ||||| || |||||||||||| |||   |          ||||        | ||||    ||    || | ||      | |     ||||  ||   | || |    ||| |  |   ||      
ATAAGGTATCAAATTGGGCTAATGTTGTCTTAGCCTATGAGCCTGTGTGGGCTATTGGAACTGGGAAGGTTGCTACTCCAGCTCAGGCTCAAGAAgtacgtgacacctt-catcttgttgattgagttcatgtt---catttctatcaattggacacatatttgttgct--ttgtttcactaacatttggtaggagaattt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116434595|gb|EG477187.1|EG477187
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434695|gb|EG477287.1|EG477287
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|86079485|gb|DR375242.1|DR375242
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125082530|gb|EL143400.1|EL143400
EST:     CCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: CCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116470932|gb|EG513524.1|EG513524
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGGGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|124856805|gb|EH941242.1|EH941242
EST:     AAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: AAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434684|gb|EG477276.1|EG477276
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125044499|gb|EL116768.1|EL116768
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAA
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAA
EST: gi|164159021|gb|ES022732.1|ES022732
EST:     GTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGT
genomic: GTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGT
EST: gi|164193914|gb|ES093030.1|ES093030
EST:     CGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: CGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164099427|gb|ES106520.1|ES106520
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGC
EST: gi|124737722|gb|EH829124.1|EH829124
EST:     TTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164025729|gb|ES131683.1|ES131683
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGC
EST: gi|125005924|gb|EL078193.1|EL078193
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAAGGAAA
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGA-GGAAA
EST: gi|86078618|gb|DR374375.1|DR374375
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|124738079|gb|EH829481.1|EH829481
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTG
EST: gi|164142655|gb|ES018495.1|ES018495
EST:     GCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: GCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164066085|gb|ES135761.1|ES135761
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGG
EST: gi|164159504|gb|EL985385.1|EL985385
EST:     GCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: GCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|124939127|gb|EL015696.1|EL015696
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGA
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGA
EST: gi|124797655|gb|EH887334.1|EH887334
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGG
EST: gi|116434506|gb|EG477098.1|EG477098
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|124930521|gb|EL007962.1|EL007962
EST:     CCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: CCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434673|gb|EG477265.1|EG477265
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116443935|gb|EG486527.1|EG486527
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164141527|gb|ES200302.1|ES200302
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGACTGGCCAAG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGG-CTGGCCAAG
EST: gi|116434661|gb|EG477253.1|EG477253
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434628|gb|EG477220.1|EG477220
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125238182|gb|EL252267.1|EL252267
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGG
EST: gi|116443947|gb|EG486539.1|EG486539
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACGCGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116443934|gb|EG486526.1|EG486526
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164127437|gb|ES008297.1|ES008297
EST:     GCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: GCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434739|gb|EG477331.1|EG477331
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434539|gb|EG477131.1|EG477131
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116470943|gb|EG513535.1|EG513535
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125192214|gb|EL207168.1|EL207168
EST:     TGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGT
genomic: TGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGT
EST: gi|116483114|gb|EG525706.1|EG525706
EST:     TGTGGGTCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|164148493|gb|ES074251.1|ES074251
EST:     TGT-GGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAA-TGGCTGGCCAAGAACG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACG
EST: gi|116470942|gb|EG513534.1|EG513534
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434639|gb|EG477231.1|EG477231
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434584|gb|EG477176.1|EG477176
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434617|gb|EG477209.1|EG477209
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125145819|gb|EL181016.1|EL181016
EST:     CATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: CATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|124787844|gb|EH877523.1|EH877523
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGG
EST: gi|124958032|gb|EL032808.1|EL032808
EST:     GCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: GCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434495|gb|EG477087.1|EG477087
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125072987|gb|EL137484.1|EL137484
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGA
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGA
EST: gi|116470931|gb|EG513523.1|EG513523
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGGGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|116434717|gb|EG477309.1|EG477309
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGTTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
EST: gi|125119985|gb|EL167936.1|EL167936
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGG
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGG
EST: gi|125231741|gb|EL245826.1|EL245826
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAA
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAA
EST: gi|116434650|gb|EG477242.1|EG477242
EST:     TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAA                         GTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC
genomic: TGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggtt ... ttatgaacagGTACACGATGAGCTGAGGAAATGGCTGGCCAAGAACGTGAGTGCTGATGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGGGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGGAAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAgtaagtggttctcgatgcgcagttgcactgtaacgtgttgcatatggtcatgatttaataggaaaaccaatgctgttttccttacgagagcttgtttcgtttatgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA