1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGACACTGAAGATATGCCGGAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttggagcgtcatggctcttaccttacaagtcggatagaactgaaaaataatctaatccattggttttggttgtggttcag
species | Arabidopsis thaliana |
transcript | AT3G55005.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAGGAAAACTCGGAACCTAACATCGTCTTGGAG GAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGGEST: gi|124717057|gb|EH808459.1|EH808459
genomic: ACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttgga ... tgtggttcagGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGGAAAGATTGATAAGG
EST: AGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAG GAATGTGAAGGATGGAACA
genomic: AGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttgga ... tgtggttcagGAATGTGAAGGATGGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACACTGAAGATATGCCGGAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGAAAACTCGGAACCTAACATCGTCTTGGAGgtaacttggagcgtcatggctcttaccttacaagtcggatagaactgaaaaataatctaatccattggttttggttgtggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG