1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAACTGCAAAAGCATGGAAGCCCAGATATTGTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgcgtaaacgtcttcatctagattccgtagcgcattttgttgtcactttcattgtccttgcttcttcagtggtatcacattttcaatttcttaacag
species | Arabidopsis thaliana |
transcript | AT3G54840.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACATGAAAAAAGAGAAGTACCTACTGAG GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAEST: gi|86076625|gb|DR372382.1|DR372382
genomic: ACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgc ... ttcttaacagGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCA
EST: TGGTTGGTAACAAMGCTGATCTACATGAAWAWAGAGAAGTACCTACTGAG GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAEST: gi|19741794|gb|AU227147.1|AU227147
genomic: TGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgc ... ttcttaacagGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCA
EST: TGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAG GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAEST: gi|86078142|gb|DR373899.1|DR373899
genomic: TGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgc ... ttcttaacagGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCA
EST: TGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAG GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCA
genomic: TGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgc ... ttcttaacagGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTGCAAAAGCATGGAAGCCCAGATATTGTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGgtgagtttgcgtaaacgtcttcatctagattccgtagcgcattttgttgtcactttcattgtccttgcttcttcagtggtatcacattttcaatttcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT