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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttacatgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactag

Basic information

species Arabidopsis thaliana
transcript AT3G54660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 6
ATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttacatgctgcatcagtgatcta-taacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactag
|||||||  || | || ||| | || ||||||||||||||||||||||| ||||| |  |||||  |||||||  || | |||||||| ||||||||||||||  |||   ||  |   |  || ||    ||  ||| |    ||||     || ||      ||| |  |     |   ||||  | |  |   | | | | || |||                                                        
ATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAGCATTAGTAAAAACGCTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatatacataatgcatcatgctgaactaaagtttag----ttttaactttttat------tttgcattaagctggagtacagacgggtttcttaaacaaatatcat--------------------------------------------------------

upper sequence: AT3G54660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 6
ATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttacatgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactag
|||||||  || | || ||| | || ||||||||||||||||||||||| ||||| |  |||||  |||||||  || | |||||||| ||||||||||||||  |||   ||   ||    | |||  | |  ||     |   ||| ||  |   |     ||||  ||   |||  ||    | | | || |||    || ||||                                                         
ATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGGGCATTAGTAAAAACACTGTTTCAGGATAACCCAACAAAACCTGATTATAGgtattatatacat---aatgcattatgcatcatgctgaactaaagtttagttttaact-----ttttattcgcattaagctggagtacag-atgagtttctta-aacaaa-------------------------------------------------------

upper sequence: AT3G54660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 6
ATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttacatgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactag
|||| || ||  |||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |||   ||||| |||||||| || ||||||||||    || | || ||         |||||       | |      | | | |    | |||| |  || |||| |||    |  |      |   || ||                                                                
ATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAGCATTAGCTAAAACTCTATTTGGGAATGAACCAACAAAACCAGATTATAGgtgttctatctattttgtgcaaaattgtttggtagcattgttggcgtggataaggattcagagatgctc-ctgtctagatacatttaactattgtctgctc----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059409|gb|DR355166.1|DR355166
EST:     GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAG                         AGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGA
genomic: GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataac ... aatcaactagAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGA
EST: gi|86059408|gb|DR355165.1|DR355165
EST:     GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAG                         AGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
genomic: GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataac ... aatcaactagAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
EST: gi|47828527|gb|CK118211.1|CK118211
EST:     GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAG                         AGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
genomic: GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataac ... aatcaactagAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
EST: gi|124814529|gb|EH899395.1|EH899395
EST:     GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAG                         AGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
genomic: GCATTGGCTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataac ... aatcaactagAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
EST: gi|125100453|gb|EL155896.1|EL155896
EST:     GTTTCAAAATGAGCCAACAAAGCCTGATTATAG                         AGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT
genomic: GTTTCAAAATGAGCCAACAAAGCCTGATTATAGgtaacataac ... aatcaactagAGCTGTTCCCTGCGCCGTTTTCTCCCAGCCACCTATTGGAACAGTTGGTCT