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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAGgtaatttattcttgatcattcctgcattttgggtcaaaatatatttaaccttgtttttccatttggggcaacgttgagtgaagttttaatgcatttctgtggtgtatattag

Basic information

species Arabidopsis thaliana
transcript AT3G54010.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54010.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G16440.1 (Glycine max), 5'ss of exon 7
ATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAGgtaat-ttattcttgatcattcctgcattttgggtcaaaatatatttaaccttgtttttccatttggggcaacgttgagtgaagttt-taatg-catttc-tgtggtgtatattag
 |   |  ||||||  |||||||||||||||| |||||||| ||||||||||| ||   ||||    | ||||| |      |    | | | |||     | ||    |  | | |    | |        |||||  ||||||| | |||  ||||| | ||||   ||  ||
GTAGAATGTGAAGGGCAGGGCTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTTgtaaaacaaatcttggttccctttttcctattgttcatctcttcttatgtcaggctgtaatctgtataatgg-gttgatggaagtttctgatgatatttcatttggttgttaccag

upper sequence: AT3G54010.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G26350.1 (Glycine max), 5'ss of exon 7
ATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAGgtaat-ttattcttgatcattcctgcattttgggtcaaaatatatttaaccttgtttttccatttggggcaacgttgagtgaagttttaatgc--atttctgtggtgtatattag
 |  ||  ||||||  |||||||||||||||| |||||||| ||||||||||| ||  |||||    | |||||||      |    | | | |||     |  |    || | | |    | |         |   | |   || | |||   ||||   ||||   ||  ||
GTAGTACGTGAAGGGCAGGGCTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGgtaaaacaaatcttgattccctttttcctattgttcatctcttcctatgtctggctgtaatctctataatggtttgatgggtgtttctgatgataatttgattggttgttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163988631|gb|ES011158.1|ES011158
EST:     TGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAG                         AATATCTGCTAAATCCGGTGATGGACACGTGATCTTCTCTCACACAGAAGA
genomic: TGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAGgtaatttatt ... tgtatattagAATATCTGCTAAATCCGGTGATGGACACGTGATCTTCTCTCACACAGAAGA