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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtgctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag

Basic information

species Arabidopsis thaliana
transcript AT3G53570.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g62080.1 (Oryza sativa), 5'ss of exon 7
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtgctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgccca-aatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    |  |  ||     | | ||          | ||  || |  | |  || ||| | || |    | |   |  |||                          
CTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAgtaagtac----atgtgcatcaagaaggcttcct-------ttcatgttttggatggtcagaatttaatattgaattactaactttgtcag----------------------

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G386991_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtgctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||          |||  | ||||    |||  | | |  | ||  ||         | ||||||  | || ||   |    | | |  |                  
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATTTGTATAgtaagtgaa--------tatgcgtcaag---aaggctatactttacttgtttttgatgatcaggttatgata-ttgaattgatgatctcttcag------------------

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtg----ctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||  | || || |      |||  ||||  | | |||   ||| ||  |||| || |||||||||||| |||||||| |||| ||||||||||||||||||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgt-ctattcaatcatgcttaaatattctgtgagttaaaa-aacttgcggatggatttaaatggtttcaacag

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtg----ctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||  | || || |      |||  ||||  | | |||   ||| ||  |||| || |||||||||||| |||||||| |||| ||||||||||||||||||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattgatatttgtaatttaattaaatgacaggaatgt-ctattcaatcatgcttaaatattctgtgagttaaaa-aacttgcggatggatttaaatggtttcaacag

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G35800.1 (Glycine max), 5'ss of exon 3
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtgctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |  ||    ||||||   | |||||    |  | | ||| |           | | | ||| ||||| ||| |||||| | |||| ||||||||||||||||||
TTGTGTGCAGATACGGAATTGGTTTGACTATCTTAATCATATTTGTATTgtaagtatt--tattgatatttgt--aatttgattaaatgaaggaatgtgc---------attatcatgcgagttgaaa-aacttgtggatggatttaaatggtttcaacag

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtgct----gttaccttt-atttgacaagtttgaggggaaaatgca-atttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    | ||| | | ||||||    ||||| |||  ||| ||  ||  ||   ||| |||| || ||||||||||||  ||||||| |||| |||||||||||| | |||
TTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTgtaagtatttattggtacttgtgatttgattcatttgaaggggcaatccatgttgttttgtgcctaaatattctgtgagttaaaa--acttgcggatggatttaaatggtttgagcag