1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGAGGGACTTGTAGCTTTAATGGAAAACGATCATGTAGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAGgtttgctttacttttaccatcttcgttttacttcctgcaaaagagatatgaaacccaaatggtaaagttaaggcctggtcattcagttctcggtttggtt...
species | Arabidopsis thaliana |
transcript | AT3G53520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAG GTGGTTAAGGAGGTGATCGACCCAAGCGCGAEST: gi|125265730|gb|EL279815.1|EL279815
genomic: CCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAGgtttgcttta ... ttgtgtgcagGTGGTTAAGGAGGTGATCGACCCAAGCGCGA
EST: AACTTGCAGAG GTGGTTAGGGAGGTGATCGACCCAAGCGCGACCATAGAGTTCAAACCAAAC
genomic: AACTTGCAGAGgtttgcttta ... ttgtgtgcagGTGGTTAAGGAGGTGATCGACCCAAGCGCGACCATAGAGTTCAAACCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGGGACTTGTAGCTTTAATGGAAAACGATCATGTAGGACCCTTCAACCTTGGTAACCCTGGAGAATTCACAATGCTTGAACTTGCAGAGgtttgctttacttttaccatcttcgttttacttcctgcaaaagagatatgaaacccaaatggtaaagttaaggcctggtcattcagttctcggtttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA