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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 2
TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag
||| ||||||||||| || ||||| || ||||||||||||| |||||| || |||| ||||||||| || || ||||| ||||| |||||  | || |||||     |     ||||   ||  |||| ||       || | | | || |||| |  ||    ||| | |||  | |   | | ||      |     ||||                                                                 
TGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGgtgagaatagcattttgttgtttgacatacta------gttatattatatatataaatacacatcatctcattcatcaatgtatggttcaaacatcaagatttgct--------------------------------------------------------------

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 6
TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag
||||||||||||||| |||||||| || ||||||||||||| ||| ||||||||||  |||||||| || || |||||||||||||||||  | |||||||||   |      | |||   |||| ||   ||| | | | | |    |  |  | ||   ||| ||    | || |   |||   | | || |  |  |  | |  |                                                            
TGCACTTGGTAATGTCATCAGTGCACTGGGGGATGAGAAAAAGCGGAAAGAAGGTGTGCATGTTCCTTATCGAGATAGTAAACTTACTCGACTTTTGCAGgtttgatcaatattgtgcttatctatat---gatgtttctgagatatgaagttgtttaggaataaat----tctgcattcctg--attttttcatggcaaagtgatcaa-----------------------------------------------------------

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S74_30V6.1 (Physcomitrella patens), 5'ss of exon 6
TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag
          ||||| |||||||| ||||| ||||| || | ||| || ||||| |  ||||| || ||||||||||| ||||| |||||||| |||||||  ||  |  | | |   |            ||||  |||| |    |   ||| ||  || ||||| ||   |     ||| | ||      ||| |    ||  || ||| || || |  | ||| ||  | | ||| |  |    |  | || |     ||||||
---------AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGG--CAAGTGCAgcctcttaa-----------gatacctgtagctgaatggttatgat--ctttacatttgggctagcttact-tggttagcggactag---atatttacaca-acgtaggcatgatgcgagtactcttctaagaccattagcattcat----ctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164121183|gb|ES181617.1|ES181617
EST:     ATACCGTGATAGTAAACTTACTCGGTTATTGCAG                         GATTCTCTTGGTGGAAATAGTAAAACAGTCATGATAGC
genomic: ATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttct ... attactgcagGATTCTCTTGGTGGAAATAGTAAAACAGTCATGATAGC