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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGATTGCAGATGTGGTGGCAGCATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCATTAAAACCGCAACAGgtacacatgatacacttattgaattcagattcatgagacttgcaaatatagccctacaacattttttatctgccatgtgctaatgtttatacttgattcacctctgatttatataaccctttactgtttgctgttttttttggttcccataaag

Basic information

species Arabidopsis thaliana
transcript AT3G49640.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49640.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G23820.3 (Glycine max), 5'ss of exon 6
GATGAGATTGCAGATGTGGTGGCAGCATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCATTAAAACCGCAACAGgtac----acatgatacactta---ttgaattcagattcatgagacttgcaaatatagccctacaacattttttatctgccatgtgctaatgtttatacttgattcacctctgatttatataaccctttactgtttgctgttttttttggttcccataaag
 |||| || || ||||| ||| |||||||||| ||||| || || |||||||| |||||||| || ||||||||||||   ||||||||| | || |||||||     | |  || | | ||   || || | |  ||   |  |  |     || |    ||     | | | || |||  ||   | |     || ||                                                             
AATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAGTATGATGATTTTGAACGCATTAAATCTGCCACAGgtagctgaaaagaattctcctagacttcaactgaattttgagttatgttttgttagaatagtattttgtatataatgtgcagtgcagtgaaacaaatgct-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799671|gb|AU230961.1|AU230961
EST:     TTTTAGAATATGATGATTTTCCTCGCATTAAAACCGCAACAG                         GCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTCAATTT
genomic: TTTTAGAATATGATGATTTTTCTCGCATTAAAACCGCAACAGgtacacatga ... tcccataaagGCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTCAATTT