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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTCCGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACgtaagaaaattcatatcttcatcctctttatctggaaaaaagctaataatctggaaaatttgttttatggttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G49310.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49310.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os10g37520.1 (Oryza sativa), 5'ss of exon 6
GAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTCCGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACgtaag----aaaattcatatcttcatcctctttatctg-gaaaaaagctaataatctggaaaatttgttttatggttctgcag--------------------------------------------
|||||||||||| |||||||| ||||| || ||| ||||||| || ||||| ||||||||  | ||||||||| | ||||| ||  | ||  | ||||| |||||     |||| ||  |  |  |  | ||| | |  ||||| | |  |  | |  | ||||     |           ||                                            
GAAGATGAGGTCCCAGTATATTCCTGAGGAGGCAAGAAGCACGATCATGAACTTCTTCCGCATACCACTCAACCTGTTTGTTTGTGTGGTTCTTTACAATgtaagtagctaaatccaacttctgtttttttttctttatgaaaataacacaccaacaagcaaatgcaaatgcaaaaaaaaaagacatttgtcccagtaacattaatcatacaaatgatgttctgcag

upper sequence: AT3G49310.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G077669_T01 (Zea mays), 5'ss of exon 6
GAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTCCGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACgtaagaaaattcatatcttcatcctct-----ttatctggaaaaaagctaata-atctggaaaatttgttttatgg--------ttctgcag
|||||||||||| ||||| || ||||| |||||| ||||||| || ||||||||||||||  | || |||||| | ||||| ||  | ||  | ||||| ||||| |   ||||  | || |||  |       || |  | |||    |  | |   | || | ||    | |||        || |||||
GAAGATGAGGTCTCAGTACATTCCTGAGGAAGCAAGAAGCACAATCATGAATTTCTTCCGCATCCCGCTCAACTTATTTGTTTGTGTGGTGCTTTACAATgtaaggag--tcattccctcgtccaatggcaagaatatacagaaatatcagcacacgagtaacactttgcctgtggacgttgtcttttgcag

upper sequence: AT3G49310.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv16s0098g01290.t01 (Vitis vinifera), 5'ss of exon 6
GAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTCCGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACgtaagaaaattca-tatcttcatcctct--------ttatctggaaaaaagc-taataatctggaaaatttgtt---ttatggttctgcag---------
|||||||||||| ||||| || || || || ||  ||||||| || ||||| ||||||||  |||| ||||| |||||||| ||||||||  | || || ||| | ||  | | |  ||| || | ||        |||  | | |  | || |  | || || | |    |     | |   ||   ||          
GAAGATGAGGTCCCAGTACATTCCAGAGGAGGCTAGAAGCACTATCATGAACTTCTTCCGCATTCCCCTCAATATCTTTGTGTGCATCGTGCTATATAATgtatgtaaccttaatggcttaattcgctgcttgaccttacattgtagtaggcatggtcatgtgaagagcagggcaactcaaccttacccacctttttttt