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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAACGACGGCAAAACAACCTTTAGTGGCATCAGCCTGGCTTAGTTTAGCCGTTGGGCTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGgtacccaagcgtgtgattcatacctaacccaatacaaatgatgagtatctttaacatttattcccacttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT3G46980.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46980.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 6
TCTAACGACGGCAAAACAACCTTTAGTGGCATCAGCCTGGCTTAGTTTAGCCGTTGGGCTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGgt------accca--agcgtgtgattcatacct-aacccaatacaaatgatg-agtatctt-taacatttattcccacttgtttcag-------
||||||  | ||||||   || ||| | ||||| || ||||||| | ||||||||||||||||||||||||| || |  || |||||| | || ||||||||      |||||  |     ||| | | | |  |||| | || | ||  |  | | |||| |||||||| |||  | |  |||  |       
TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacattt-ttcttattcttttgtgtttccag