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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAACTGGCTCAGACGGCATGGTAAGAGTCAGCCTGAATGGTTCGGCTCCACCCCGTCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGTCAGgtgagccatcaatcatgcatcctaacatcatttgattgatctctatatatatacaaacacatgtctgaaaacgtgacaaatttgaacaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G44880.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164221249|gb|ES198933.1|ES198933
EST:     TCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGTCAG                         ATGCTAGATAGATTTGATCAGCATAC
genomic: TCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGTCAGgtgagccatc ... gaacaaacagATGCTAGATAGATTTGATCAGCATAC
EST: gi|125234375|gb|EL248460.1|EL248460
EST:     CCACCCCGTCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGTCAG                         ATGCTAGATAGATTTGATCAGCATACACAAGTATGCT
genomic: CCACCCCGTCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGTCAGgtgagccatc ... gaacaaacagATGCTAGATAGATTTGATCAGCATACACAAGTATGCT