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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAATTTCAGgttagtttggagattatggttcatagttcatcgttatatgtggaaaccaacttgcaatgtagtcttcttctccttttagtttagtatgtgtgtcttatgtagactcaatatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G28700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G28700.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 6
TACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAATTTCAGgttagtttggagattatggttcatagttcatcgttatatgtggaaaccaacttgcaatgtagtcttcttctccttttagtttagtatgtgtgtcttatgtagactcaatatctgcag
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TGCCAACAATCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAGgttcgtttgataaatttaaataa--actctttg--atgactgggttct--tgtgctaactgttcttttattaattatgatttttgactttttcttaattt---ttcatt--------