1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGATTGCAAGTTTGTATGAAGACTACTACAGGGCTAAAGGCGTAAAATTTATAAAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAACAAAAAGgtaagatcgtttcttttagcttgagattcaactcgaaaaatgtctggtacgttgcatctatgtatacaactaaggatggcaagaatcagtagaaccacagatacttctggtccagtactcaaactatgaaatcttgagccttgttcaatgtatttgtttattgatatgaggttttttggttttcgatttacag
species | Arabidopsis thaliana |
transcript | AT3G27820.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATCATTTGAGTTTGACTCGAACAAAAAG GTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGGEST: gi|116484783|gb|EG527375.1|EG527375
genomic: CATCATTTGAGTTTGACTCGAACAAAAAGgtaagatcgt ... cgatttacagGTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGG
EST: AAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAACAAAAAG GTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGGTTEST: gi|124874583|gb|EH956228.1|EH956228
genomic: AAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAACAAAAAGgtaagatcgt ... cgatttacagGTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGGTT
EST: TATAAAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAACAAAAAAG GTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGGT
genomic: TATAAAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAAC-AAAAAGgtaagatcgt ... cgatttacagGTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGATTGCAAGTTTGTATGAAGACTACTACAGGGCTAAAGGCGTAAAATTTATAAAAGGAACGGTTTTGACATCATTTGAGTTTGACTCGAACAAAAAGgtaagatcgtttcttttagcttgagattcaactcgaaaaatgtctggtacgttgcatctatgtatacaactaaggatggcaagaatcagtagaaccacagatacttctggtccagtactcaaactatgaaatcttgagccttgttcaatgtatttgtttattgatatgaggttttttggttttcgatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA