1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGACTGTGAATTTGCACACAAGCAACCTCGTTTTGCTGCTTATTGACACGTTTCTAAACCGTCTGgtaaaacaattctttcctctgcatttacgacgagttttcgttttcattaatgtgttgaacctgaggtctttttgtgatgttgctttgcag
species | Arabidopsis thaliana |
transcript | AT3G27770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATTGACACGTTTCTAAACCGTCTG AAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTCEST: gi|19799834|gb|AU231124.1|AU231124
genomic: TATTGACACGTTTCTAAACCGTCTGgtaaaacaat ... tgctttgcagAAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTC
EST: ACGTTTCTAAACCGTCTG AAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTCEST: gi|125226683|gb|EL240768.1|EL240768
genomic: ACGTTTCTAAACCGTCTGgtaaaacaat ... tgctttgcagAAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTC
EST: CAACCTCGTTTTGCTGCTTATTGACACGTTTCTAAACCGTCTG AAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGAEST: gi|125072376|gb|EL137098.1|EL137098
genomic: CAACCTCGTTTTGCTGCTTATTGACACGTTTCTAAACCGTCTGgtaaaacaat ... tgctttgcagAAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGA
EST: CTTATTGACACGTTTCTAAACCGTCTG AAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTC
genomic: CTTATTGACACGTTTCTAAACCGTCTGgtaaaacaat ... tgctttgcagAAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACTGTGAATTTGCACACAAGCAACCTCGTTTTGCTGCTTATTGACACGTTTCTAAACCGTCTGgtaaaacaattctttcctctgcatttacgacgagttttcgttttcattaatgtgttgaacctgaggtctttttgtgatgttgctttgcag
- - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - GCTGCT