1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTTTGGGGGGTAAAACCTTCAAGATGAAGTTTGGTCATCATGGAGGAAACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatacccaacctcaaaatgttccatttaattccaagcatactaccaactaaggatttgaacttccacattcaaagttcggataattatctgataaaacgactgtgctaggaacattgttacaagcttgacaaaatctaaatatggtgtatcattgtctttttttctgtaattcttggcag
species | Arabidopsis thaliana |
transcript | AT3G27740.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCACCCAGTTYGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAG AATCACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTAEST: gi|125212556|gb|EL227510.1|EL227510
genomic: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatac ... ttcttggcagAATCACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTA
EST: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAG AATCACAACTATGCGGTTGEST: gi|125185486|gb|EL200440.1|EL200440
genomic: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatac ... ttcttggcagAATCACAACTATGCGGTTG
EST: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAG AATCACAACTATGCGGTTGATCCAGCTTEST: gi|47830985|gb|CK120669.1|CK120669
genomic: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatac ... ttcttggcagAATCACAACTATGCGGTTGATCCAGCTT
EST: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAG AATCACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTA
genomic: ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatac ... ttcttggcagAATCACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTTGGGGGGTAAAACCTTCAAGATGAAGTTTGGTCATCATGGAGGAAACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGgtaccaatacccaacctcaaaatgttccatttaattccaagcatactaccaactaaggatttgaacttccacattcaaagttcggataattatctgataaaacgactgtgctaggaacattgttacaagcttgacaaaatctaaatatggtgtatcattgtctttttttctgtaattcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA