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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGgtaacacatatttgcttctagtcattagtttattaatttagacaaataaagatataatctaacgcattcatcgttagtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G24250.2 (Glycine max), 5'ss of exon 6
ATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGgtaacacatattt--------gcttctagtcattagtttattaatttagacaaataaagatataatctaacgcattcatcgttagtgcag
|||||||||| | || ||| || ||||||||   |||||||| |||||||||||||||||||||||||||||  ||||||| ||  |||| || ||| |||||| | ||  ||        |||||| ||  ||  || || ||||| | | ||| |  | ||    | ||   |   |  |    ||||
ATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGAGGAACCACAGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatgattatacaatggcttcttgt--ttgtttcatgaattttgcctaatgatta-atccctttacatttaacttatattggcag

upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 6
ATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGgtaacacatatttgcttctagtcattagtttattaatttagacaaataaagatataatctaacgcattcatcgttagtgcag--------
|||||||||| | || ||| || ||||||||   |||||||| |||||||||||||||||||||||||||||  ||||||| ||  |||| || ||| |||||| | ||  ||   |  | |   |  ||| ||  |||    |  |     ||     |||  | || |   |||    |         
ATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGAGGAACCACAGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatgatta--tacaatggcttctttgtttgtttcatgagttttgcctaatgattaatccctttacatttaacttatattggcag

upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 6
ATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGgtaacacatatttgctt-ctagtcattagtttattaatttagacaaataaagatataatctaacgcattcatcgttagtgcag-
|||||||||||| || ||| | |||||||||   |||||||||||||| ||||||||||| |||||||||||  | ||||| ||  | || || || ||||||  | ||  ||||||  | |   | |  ||  |   ||    || |     ||    ||  |   || |    || | |   
ATCTGCAGAGCAACTCAGTACCCAGATTGGACAGTTGTTTGAAGAACCCCAGATTTATCGAATTGATCACTACTTAGGAAAGGAACTTGTGCAGAATATGgtagtaaatgattgcttattggctctcatattgcttgcttcataaacttggcctaatccctctccatttgacttgtattaccag

upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 6
ATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGgtaacacatatttgcttctagtcattagtttatt-aatttagacaaataaagatataatctaacgcatt-cat-cgttagtgcag------------------------------------------
 ||||||||||| || ||| | ||||||||||  || ||||| |||||||||||||| ||||||||||||||||||||||| ||  | || || ||  |||||| |||| | |  |   | |  |   ||||||  ||  | | ||||||  ||| ||| |    | ||  || |  || |                                              
TTCTGCAGAGCAACTTAGTGCCCAGATTGGAGAGTTATTTGATGAACCACAGATTTACCGTATTGATCACTATCTGGGAAAGGAACTCGTGCAGAATTTGgtaatacatgtatcataaaaattgtgtctttatttgataaaaaaaaataataataaaatgtttgtctttgtatgccctattttgaaatgtctgctgatttctctccttatgccacttacatttgcag