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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGgtacgtatctatttcaagatatcatcattgccctacttctcttttagtcaaagcccaaaccaaaactagatcttgctttactattataaccactcaatcttatggttctttttttgttaacag

Basic information

species Arabidopsis thaliana
transcript AT3G26340.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26340.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G17960.1 (Glycine max), 5'ss of exon 6
CTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGgtacgtatctatttcaagatatcatcattgccctacttctcttttagtcaaagcccaaaccaaaactagatcttgctttactattataaccactcaatcttatggttctttttttgttaacag
||||  | || |||||||| |  ||||||||| | ||||| ||    ||||||||||| || || ||||||||||| |||||||||||  ||||||||||||  || |  | |||   || | |  ||  || ||   ||||| | | ||||          ||  |    |||| | |||   ||                                     
CTGGTCTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAGCGGgttagt-taaacttcct-atttaactatcacc-tataactcttct-gccaaattttgttgacaattt---ccttgttgtacatctag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083116|gb|DR378875.1|DR378875
EST:     TTCTCTGTCGGTTCCGGTTCACCATACGCTTATGGTGTTCTGGACAGCGG                         ATACAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATC
genomic: TTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGgtacgtatct ... ttgttaacagATACAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATC
EST: gi|86076876|gb|DR372633.1|DR372633
EST:     TTCTCTGTCGGTTCCGGTTCACCATACGCTTATGGTGTTCTGGACAGCGG                         ATACAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATC
genomic: TTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGgtacgtatct ... ttgttaacagATACAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATC