1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGAGAGCATTGAGGAGTTGTACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaacagaatcaatctagtctatctatattcttgtcttgttggtgtattggtgtctcatttggtcttccatttaacaaaacag
species | Arabidopsis thaliana |
transcript | AT3G25520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGAEST: gi|125245370|gb|EL259455.1|EL259455
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGA
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACEST: gi|125270021|gb|EL284106.1|EL284106
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAAC
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGEST: gi|164051725|gb|ES188117.1|ES188117
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAG
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGAEST: gi|124757980|gb|EH848110.1|EH848110
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGA
EST: AAACCGTGAAACCTGCTCCCAAGCAACACAAGTAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGEST: gi|124855213|gb|EH939650.1|EH939650
genomic: AAACCGTGAAACCTGCTCCCAAGCAACACAAG-AGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCG
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAEST: gi|164142881|gb|ES054519.1|ES054519
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAA
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGEST: gi|116467789|gb|EG510381.1|EG510381
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAG
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGAEST: gi|164062292|gb|ES179954.1|ES179954
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
EST: CAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGA- GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGAEST: gi|164203042|gb|ES090293.1|ES090293
genomic: CAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
EST: CAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGEST: gi|164128106|gb|ES181933.1|ES181933
genomic: CAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTG
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTEST: gi|164178819|gb|ES210506.1|ES210506
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGT
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTAGAAGAAACTTACTTACGAGGAGAGGAAGAACEST: gi|125297432|gb|EL311517.1|EL311517
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTT-GAAGAAACTTACTTACGAGGAGAGGAAGAAC
EST: ACCCCAACCCAAAGAAAACCGTGAAACCTGCTACCCAAGCAACACAAGAG GTACAACTTGAAGAAEST: gi|125010502|gb|EL082771.1|EL082771
genomic: ACCCCAACCCAAAGAAAACCGTGAAACCTGCT-CCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAA
EST: ACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAEST: gi|124888831|gb|EH967733.1|EH967733
genomic: ACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGA
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGAEST: gi|164184962|gb|ES091120.1|ES091120
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
EST: CAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGAEST: gi|125123555|gb|EL170004.1|EL170004
genomic: CAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGEST: gi|164171599|gb|ES083946.1|ES083946
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTG
EST: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTAACTTACGAGGAGAGGAAGAACAAGTTGATCGEST: gi|125023387|gb|EL095656.1|EL095656
genomic: GACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTA-CTTACGAGGAGAGGAAGAACAAGTTGATCG
EST: CAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGAEST: gi|125291064|gb|EL305149.1|EL305149
genomic: CAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
EST: CTGCTCCCAAGCAACACAAGAG GTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
genomic: CTGCTCCCAAGCAACACAAGAGgtagggaaac ... aacaaaacagGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAACAAGTTGATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGAGCATTGAGGAGTTGTACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACCTGCTCCCAAGCAACACAAGAGgtagggaaacagaatcaatctagtctatctatattcttgtcttgttggtgtattggtgtctcatttggtcttccatttaacaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA