Sequence
atgc intronic sequence ATGC exonic sequenceAAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgtttgcatttcggattttagtacactcatgtcttcaccagatataacggtttcttacggggtttcatttgtttctttctggcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G25230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G46090.2 (Glycine max), 5'ss of exon 6
AAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgt-----ttg--catttcg------gattttagtacact----catgtcttcaccagatataacg--gtttcttacggggtttcatttgtttctttctggcag
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AAAACTGTTTCTGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTGAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGgtaatttctgattattttgaatgatgactattgtctattgctttatgtatttcataattaatacattgtttcttactatatctttgtcattt-tgtgtcttag
upper sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G32830.1 (Glycine max), 5'ss of exon 6
AAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgt--ttgc-----atttcggatt--------------ttagtacactcatgtcttcaccagatataacg--gtttcttacggggtttcatttgtttctt--tctggcag-
|||| || ||||||||||||||||| || ||||| | ||||| || | ||||||||||| |||||||||||||| || |||||||| |||| |||||| || | |||| | || || || | | |||| || | || || ||||| || | | | ||| | | | |||
-AAACTGTTTCAGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGGtaattactgattattttgaatgatgactattgtctattgctatatttatgtatttgataattaatacattatttctgactatatctttgtcattttgtgttttctcagt
upper sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G10730.1 (Glycine max), 5'ss of exon 6
AAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgt---ttgcatttcggattt--tagtac-actcatgtcttcaccagatataacggtttcttacggggtttcatttgtttctttctggcag---------------
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AAGACTGTGTCTGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgctagctaatacttattaatgtgaatgatggccttttcttttttatggatttaggacatggtttctgatgtcttcttcctttttttttcattcttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47828402|gb|CK118086.1|CK118086EST: GAAGGAAGGGGATGTATATGAGCGTCCTATCGAGGAGGCAGTTGTGAAAG TGCAATTGATAGGGAAAC
genomic: GAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgtttgcattt ... tttctggcagTGAAATTGATAGGGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAACAGTGTCAGAAGTAACTGATGATAACAAGGTTGTGAAGAAAGTCTTGAAGGAAGGGGATGGATATGAGCGTCCTAACGAGGGGGCAGTTGTGAAAGgtttgcatttcggattttagtacactcatgtcttcaccagatataacggtttcttacggggtttcatttgtttctttctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA