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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGCAGTAAAAGTACAGAGGCCTTTCGTTCTCGAGACTGTGACTGTTGACTTGTTTGTGATACGGAATTTAGGTCTATTTCTGCGGAAGTTCCCTCAGgcaaggttttgtctgacggctcagcttatgcagttctgtaattgttctctttcacctcaatgactttcgatcttcttgttttcatggtaatttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G24190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0136g00140.t01 (Vitis vinifera), 5'ss of exon 6
AGTGGCAGTAAAAGTACAGAGGCCTTTCGTTCTCGAGACTGTGACTGTTGACTTGTTTGTGATACGGAATTTAGGTCTATTTCTGCGGAAGTTCCCTCAGgcaaggttttgtctgacggctcagcttatgcagttctgtaattgttctctttcacctcaatgactttcgatcttcttgttttcatggtaatttgtgcag------------------------------------------
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GGTGGCTGTTAAAGTGCAGAGGCCTTTCGTTCTTGAGACTGTGACAGTTGATTTGTTCGTCATACGAAACTTGGGGTTAGTTCTCCGGAAGTTTCCTCAGgtaatgttttgctaaattaatctgc--aatcacttttctctttattaattgttacacttgttgcttttaag-tggttactatgatgatgattatggtctctttatgggtcctgattctgtccttactgctttttgtttcag