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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAAAGAAGAGGGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTTATATCGAGAGACGAGGGGCTCCACTGTGACTTTGCGTGTCTCTTGTACAGgtaagaataggtctgtatggtaacagcaagccatactgtgtttattgagccatctctattatccattcactccttatcatacattgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G23580.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23580.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ25175 (Selaginella moellendorffii), 5'ss of exon 6
GGCTAAAGAAGAGGGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTTATATCGAGAGACGAGGGGCTCCACTGTGACTTTGCGTGTCTCTTGTACAGgtaagaataggtctgtatggtaacagcaagccatactgtgtttattgagccatctctattatccattcactccttatcatacattgtgcag
|||| || || || || || ||||| ||  | || || || || || ||||| || || |||||||||||||||||||| ||||| || ||||||||||||||||        | |   ||   ||  | |    || |    || | |  || |  |                                 
GGCTGAAAAAAAGAGGCCTCATGCCAGGACTCACTTTTTCCAATGAACTTATCTCTAGGGACGAGGGGCTCCACTGTGATTTTGCCTGCCTCTTGTACAGgtaagccataagatctccagtcgaag-gatctggcctcta---atcgggtgatttgcag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125200694|gb|EL215648.1|EL215648
EST:     ATATCGAGAGACGAGGGGCTCCACTGTGACTTTGCGTGTCTCTTGTACAG                         TTTGCTGCAGAAGCAGCTTCCATTGGAGAAAGTTTA
genomic: ATATCGAGAGACGAGGGGCTCCACTGTGACTTTGCGTGTCTCTTGTACAGgtaagaatag ... cattgtgcagTTTGCTGCAGAAGCAGCTTCCATTGGAGAAAGTTTA