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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACTCTAGGAATCCATCTAAAAGGCCTTTAATAAAGgtaagacaaatgtatgcaaccacattgctttcttgatcttctctttagttgaatcttgataatcttctatttacctgagcag

Basic information

species Arabidopsis thaliana
transcript AT3G21620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 5'ss of exon 6
GCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACTCTAGGAATCCATCTAAAAGGCCTTTAATAAAGgtaagacaaatgtatgcaaccacattgctttcttgatcttctctttagttgaatcttgataatcttctatttacctgagcag-----------------------------------------------------------
|||     |  ||||  |  ||| || |||| |||||||||||||||||||||||||    ||| |    || ||| ||||| ||||||||   | ||||||        |  ||   | ||  ||  | |||| | |||||||| |      ||||| |  | || |    ||   |                                                               
GCTTGATAAGATGGTCAAAGAGAAGAAGAAAATGCAGAATTGGCTTGATTACTATCAGCTGAAATATGAAAGAAATACATCTCAAAGGCCTACTACAAAGgttg--ttgctaaatttgatcatgttaatctcttta-cttctctt-acacagttcttgttgtttttatcaaaacaaaaaagaataatttttatttatgattccttatttattcttcttatttttctatacttcttttccag