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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTACTATCTCTGTTACTACAGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTGgtaggtggaaacttccccttaattcaatcacatcatcacataacaatcgttaacacttgttaatacctcttcctggaactttccag

Basic information

species Arabidopsis thaliana
transcript AT3G21100.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19743477|gb|AU228830.1|AU228830
EST:     TTACTACAGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTG                         GTTCGATAGAAGCAGAGAGAAAGCGTGAAAAG
genomic: TTACTACAGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTGgtaggtggaa ... aactttccagGTTCGATAGAAGCAGAGAGAAAGCGTGAAAAG
EST: gi|125277596|gb|EL291681.1|EL291681
EST:     CCTAGCAATTG                         GTTCGATAGAAGCAGAGAGAAAGCGTGAAAAG
genomic: CCTAGCAATTGgtaggtggaa ... aactttccagGTTCGATAGAAGCAGAGAGAAAGCGTGAAAAG