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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtactctaatggaaaaattgtcagggatttcgtttccttgttgatgtcttatgcccatttcttttcttttgccag

Basic information

species Arabidopsis thaliana
transcript AT3G20630.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G39770.1 (Glycine max), 5'ss of exon 6
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtac-tctaatggaaa--aattgtcagggatt-tcgtttccttgttgatgtcttatgcccatttcttttcttttgccag
| |||||||||||||||||||| || || ||||| |||||| ||||| | |  ||| ||||||||||||||||||| ||| | |||||| |||| ||||||||  | |  |    |  |||||      ||| |    | || |||     ||  ||    |   || | || | ||||
ACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagatttggtccctactaattgctgcttattataaaatactagtttgacactcttgtatttcatttgttttcttccag

upper sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G22240.1 (Glycine max), 5'ss of exon 6
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtac--tctaatggaaaaattgtcagg--gatttcgtttccttgttgatgtcttatgcccatttcttt-tcttttgccag
||||||| |||||||||||||| || || ||||| |||||| ||||| | |  ||| ||||||||||||||||||| ||| | |||||| |||| ||||||||   |        |  ||| || |     | |    | |  |||     ||| ||    |   ||| | || | ||||
AAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagagttggtccctactattttctgcttattataaaatacaagtttgacacttctgtatttcattttgttttcttccag

upper sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtactc--taatggaaaaattgtcagggatttcgtt-tccttgttgatgtcttatgcccatttcttttctt---ttgccag-------------------------------------------------------------------------------------------------
| ||||| ||||||||||||||||| || ||||| |||||| ||||| | |  ||| | ||||||||||| ||||| ||||||||||||||||| |||||||| |   |  | |  |  |||   ||       || || ||  |  | ||||   ||     |    |||   | || ||                                                                                                 
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag