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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagctaaacttctagcacttaaactttcttttttactacttcttagtctggttatagggtcagcatagctgttattcatagtcttatgttacct...

Basic information

species Arabidopsis thaliana
transcript AT3G20440.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20440.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G10380.1 (Glycine max), 5'ss of exon 6
GTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagctaaac-ttctagcacttaaactttcttttttactacttcttagtctggttatagggtcagcatagctgttattca---tagtcttatgttacct---
|| |||||| |  | ||   ||||||||||||||| ||||||||||||||  |   ||| |||||||||||||||||||||||||| || ||    ||| ||||  || ||   ||||| || | ||| | |||     |   | | || || | |      |||  ||| ||||   || |   ||| | |     
GTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGAgt----aagttaaatgttgtaattcttaa-ctatttttctcactgtaatt--atattgtgattgagattctttagaagttcttcaagttactaacatgatgctcact

upper sequence: AT3G20440.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 5'ss of exon 6
GTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagctaaacttctagcacttaaactt-tcttttttactacttcttagtctggttatagggtcagcatagctgttattcatagtcttatgttacct
|||||||||||| | |||  |||||||||||||||||||||||||||||| ||   ||||||||| || ||||   |||| |||||||  ||  |     ||  |||||    |||  |  | |||| | |   |  | || ||  | || ||   |    ||  |||     || |      | | || |
GTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAAgtgggttcaatattcttctcattcttttatctatcttgtattaaatattttggtgagatt-taatcttgaaatttctgagtagcacacatgcgtatcactt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116407561|gb|EG450153.1|EG450153
EST:     AGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGG                         GTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGATTTC
genomic: AGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagc ... accatttcagGTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGATTTC
EST: gi|116407538|gb|EG450130.1|EG450130
EST:     AGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGG                         GTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGATTTC
genomic: AGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagc ... accatttcagGTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGATTTC