1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaatctcttcatactctagagccaatggtttacctttttaattatatatctcatttgattcaattattcag
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG GTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAATEST: gi|124952792|gb|EL028035.1|EL028035
genomic: AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaa ... aattattcagGTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAAT
EST: ATCCTAATATGAATG GTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAATEST: gi|125322593|gb|EL336678.1|EL336678
genomic: ATCCTAATATGAATGgtacaaagaa ... aattattcagGTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAAT
EST: -AAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG GTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTEST: gi|125019319|gb|EL091588.1|EL091588
genomic: AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaa ... aattattcagGTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCT
EST: TGGCGAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG GTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAEST: gi|164162779|gb|EL976716.1|EL976716
genomic: TGGCGAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaa ... aattattcagGTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAA
EST: GAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG GTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAAT
genomic: GAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaa ... aattattcagGTAGCCCTGCCGCAGACACCTCACTTACAGCTCACTGGTTCTCTTCAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGgtacaaagaatctcttcatactctagagccaatggtttacctttttaattatatatctcatttgattcaattattcag
- AAAGAA
- AAGAAG
- - AGAAGC