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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag

Basic information

species Arabidopsis thaliana
transcript AT3G20040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 6
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag
|| ||||||||||| ||||||||||||||||||||||   | |||||||| ||||||||| |||| |||||||| |||||    ||| |||||||   ||| |  ||  ||      |   | || ||| || | ||| |||||  |  || || |      |  |||   ||                       
GTTGTCAATATGGAATGGGGAAACTTTTGGTCATCTCACTTACCAAGAACATCATATGACATTGATTTGGATGCTGAGAGCCCTAATCCAAATGATCAGgtgaggttcggcatttgatgactcctgttgctt-gatttgtcatgacta-aaattttggagatttgggtg--cag----------------------

upper sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 6
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag
|| ||||||||||| ||||||||||||||||| ||||   | |||||||| || |||||| |||| |||||||| |||||    ||| |||||||   ||| |  || |||      |   | || ||| || | ||| |||||  |  || || |      |  |||   ||                       
GTTGTCAATATGGAATGGGGAAACTTTTGGTCCTCTCACTTACCAAGAACGTCGTATGACATTGACTTGGATGCTGAGAGCCCAAATCCAAATGATCAGgtgagtttctgcatctgatgactcctgttgctt-gatttgtcatgacta-aaattttggagatttgggtg--cag----------------------

upper sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag
|| || |||||||| |||||||||||||||||||||| | | |||||||| || |||||  |||| || ||  | || ||    ||| |||||||   ||| |  || |||      |   | || ||| || | || |  |||  | ||| | |  ||||   |  |  |  || | |                 
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgctt-gattcaagatgact-caaatcagattttgctaatt--ttgatgtag-----------------

upper sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag
|| || |||||||| |||||||||||||||||||||| | | |||||||| || |||||  |||| || ||  | || ||    ||| |||||||   ||| |  || ||           | |  ||| || | || |  |||  | ||| | |  ||||   |  |  |  || | |                 
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatccagttgctt-gattcaggatgact-caaatcagattttggaaatt--ttgatgtag-----------------

upper sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGA-GTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag
||| ||||||||||||||||||||||||||||||| | | ||||  | || | || ||     |   ||||||   |||||  |  || ||   ||    |||| |   |   ||    || |  |||  | |  | |||  || ||       |   ||    |||    | |||   |||| | ||| ||   ||
GTGATCAATATGGAGTGGGGAAACTTTTGGTCATCACATTTGCCTCGGACCT-ATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacatctaaa----ccatgatctattctgctgttactattttcattgtctgccttgggacag-cgcttaatgatgtggcttttgatt-gcag