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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCACCATTGGACCGATGTCTTCGCCGGAGCTATCATCGGAATTTTTGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGgtattaaaccaaaacaaacaaaaaattaccatcatgttattgctttcttgataataataacggttgatgacaatattttaacag

Basic information

species Arabidopsis thaliana
transcript AT3G18220.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797482|gb|AU229292.1|AU229292
EST:     CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACG                         GATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC
genomic: CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGgtattaaacc ... attttaacagGATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC
EST: gi|86083821|gb|DR379580.1|DR379580
EST:     CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACG                         GATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC
genomic: CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGgtattaaacc ... attttaacagGATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC
EST: gi|86080169|gb|DR375926.1|DR375926
EST:     CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACG                         GATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC
genomic: CGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGgtattaaacc ... attttaacagGATGGGCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTC