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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatgaatttcttttcaaattttcacaactacttatcatctatatatgcaatatgcaaaacttatcatttatcaattggtgcaaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G15840.5
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15840.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G03360.2 (Glycine max), 5'ss of exon 5
ATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatgaatttc----ttttcaaattttcacaacta-cttatcatctatatatgcaatatgcaaaacttatcatttatcaattggtgcaaaaag--
 || ||||| || ||||| || || ||||| |||||||| ||||| ||||||||||| ||||||  ||  |||||||| || ||||| ||||| ||| |||||  ||   |    |    |||  |  ||   ||||    | |   | || ||||  |||  |   || ||     || |  || |     ||||    
CTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAGTTTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagccagccacacaatttctagcttaatacaaaagtcattctagctttataatcaaactctcaatctgtcttttgaggaaataagataaaagcaa

upper sequence: AT3G15840.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 5'ss of exon 6
ATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatgaatttcttttcaaattttcacaactacttatcatctatatatgcaatatgcaaa--acttatcatttatcaattggtgcaaaaag-------
 ||||||||||| || ||    || ||||| ||||| |||| ||| ||||||||||| ||||||   |||| ||||||||| ||||| ||||| ||| |||||  |||   | |  | ||  ||||   | || |  ||  |||  || | ||  || ||   |    ||     ||  ||||   |   || |        
CTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCTACAAACTGCAGTTTCAAGTTCCCAAGGCTTGGCGAAACAAACCAATTGAATTCTTTAATCAGgta-ataaaatactcttctttcaattcagagaattgtttgccatacat-tgtgatatttgtggactgtttgcagattgccaatcaatctcaagattaattaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124781274|gb|EH871217.1|EH871217
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCT
EST: gi|125016427|gb|EL088696.1|EL088696
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCC
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCC
EST: gi|116420760|gb|EG463352.1|EG463352
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|124880458|gb|EH959360.1|EH959360
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGC
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGC
EST: gi|116441102|gb|EG483694.1|EG483694
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|124741053|gb|EH832215.1|EH832215
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCGTCAACGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|125243613|gb|EL257698.1|EL257698
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGA
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGA
EST: gi|116479685|gb|EG522277.1|EG522277
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTTTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|125069663|gb|EL135361.1|EL135361
EST:     CGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: CGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|47828422|gb|CK118106.1|CK118106
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|116479684|gb|EG522276.1|EG522276
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|116441100|gb|EG483692.1|EG483692
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
EST: gi|124884094|gb|EH962996.1|EH962996
EST:     AAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATT
genomic: AAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTC-TAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATT
EST: gi|116428971|gb|EG471563.1|EG471563
EST:     TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAG                         GGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT
genomic: TTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGgtatgtaatg ... gtgcaaaaagGGTCTAGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTT