Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGgtttttatctctttttacttgtactcatttcccggttttcattctttaagattctcttgattcattcgtgttcttcttggcag

Basic information

species Arabidopsis thaliana
transcript AT3G14940.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14940.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 5
TCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGgtttt--tatctctttttacttgtactcatttcccggttttcattctttaagattctcttgattcattcgtgttcttcttggcag
||| || ||||| || ||||| || || ||||| |||||||||||||||||||||||||| ||| | ||  ||  ||| || ||  | ||||||||||||||     ||        |  || || |  | |   | | ||  |     |||| |   ||   ||    |               
TCCAAGAGTCACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAATGATGGCTGCTAATTTGTATAATGCCCAGATAGAAGACCTGATGTTTGAGgtaaaagtaaggacacatttttttaatattgtagtgatattagtctcacaagaattctttttatcgcatgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073317|gb|DR369074.1|DR369074
EST:     TGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAG                         TTATCTATGTGGCGTTGCACTGATGAATTCCGTGTGCGGGCGGATGAACTG
genomic: TGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGgtttttatct ... ttcttggcagTTATCTATGTGGCGTTGCACTGATGAATTCCGTGTGCGGGCGGATGAACTG
EST: gi|47828699|gb|CK118383.1|CK118383
EST:     TGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAG                         TTATCTATGTGGCGTTGCACTGATGAATTCCGTGTGCGGGCGGATGAACTG
genomic: TGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTTTGAGgtttttatct ... ttcttggcagTTATCTATGTGGCGTTGCACTGATGAATTCCGTGTGCGGGCGGATGAACTG