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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGGCGTTGTCAAGGATTGGGTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGTTACGCCATCGgtaagacaaaacttctcacatacaaattggctaacaagaaaaaaatttgcttctcatacagtgtgctctgtgttcacacacag

Basic information

species Arabidopsis thaliana
transcript AT3G14410.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G18730.1 (Glycine max), 5'ss of exon 8
GTTGCTGGCGTTGTCAAGGATTGGGTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGTTACGCCATCGgtaagacaaaacttctca-----catacaaat-----tggctaacaagaaaaaaa---tttg----cttctcatacagtgtgctctgtgttcacacacag
||||| || ||||||||||||||||||||||||||  |||| ||| |||| ||||| || || ||  | ||| |||||||| | || ||||| || || ||||||  |    ||||       | |  ||||     || || || ||| | | |   ||||     || |||||   | | ||     | |      | 
GTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGgtaagtaattgattctgtttgaccttctaaattttcctgtctcactagatatatagcctttgaggatttttcataacatttcctgcaaatgccagagtat

upper sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G40160.1 (Glycine max), 5'ss of exon 6
GTTGCTGGCGTTGTCAAGGATTGGGTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGTTACGCCATCGgtaagacaaaacttctca-----catacaaat-----tggctaacaagaaaaaaattt---gcttctcatacagtgtgctctgtgttcacacacag-----
||||| || ||||||||||||||||||||||||||  |||| ||| |||| ||||| || || ||  | ||| | |||||| | || ||||| || || ||||||  |    ||||       | |  ||||     || || |   || | |  |||   |  | |   | |   |   |||      | || ||     
GTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTTATCAATTTGTTTGGTTATGCAATTGgtaagtaactgattctgtttgaccttctaaattttcctgtctcattggatatagcttttgaggatttttcataacctttcctgcaaatgc-cagagtactt

upper sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv15s0046g00460.t01 (Vitis vinifera), 5'ss of exon 6
GTTGCTGGCGTTGTCAAGGATTGGGTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGTTACGCCATCGgtaag-------acaaa-acttctcacatacaaattggctaacaagaaaaaaatttgc----ttctcatacagtgtgctc-tgtgt---tcacacacag-
|||||||| ||||| ||||||||||| ||||||||  |||||||  |||| ||||| ||||| ||||| ||||| || ||||| || ||||| |   | ||||||       |||||   || |  |||    ||    | |    |    ||| ||     | ||| || |    |||  || ||   ||| |      
GTTGCTGGAGTTGTAAAGGATTGGGTTGTTGTCTTACTGTCAGCAGTTCTGTTTGCAGACACAAAACTGACAATTATAAATCTGTTTGGTTATGGAGTTGgtaagtatttgaacaaatgttttttgcattttgatactttgatctcattggaatctggcatatcctcttagaaatggctaatgagtatgtcatatgtgac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124781039|gb|EH870982.1|EH870982
EST:     CATCAATCTTTTCGGTTACGCCATCG                         CTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCAT
genomic: CATCAATCTTTTCGGTTACGCCATCGgtaagacaaa ... tcacacacagCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCAT