Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAATCCAAAGGCTTGTGTTCTTCAACAAAGGAAGACCCCTGCATTTTGCTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcggttttgtgcctttgctaaatactcgctattatattccgacgccatagctaacctataattgattgtgttgcacatttccacag

Basic information

species Arabidopsis thaliana
transcript AT3G14400.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164070669|gb|ES116215.1|ES116215
EST:     AATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAG                         CCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
genomic: AATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcgg ... atttccacagCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
EST: gi|116412844|gb|EG455436.1|EG455436
EST:     CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAG                         CCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
genomic: CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcgg ... atttccacagCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
EST: gi|116411700|gb|EG454292.1|EG454292
EST:     CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAG                         CCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
genomic: CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcgg ... atttccacagCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA
EST: gi|116412851|gb|EG455443.1|EG455443
EST:     CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAG                         CCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGGCAA
genomic: CTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcgg ... atttccacagCCTGAAAAAAGACGCGCTGTCACATCTACGTTCATGCGGATGGTATGACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAATCCAAAGGCTTGTGTTCTTCAACAAAGGAAGACCCCTGCATTTTGCTGAGAAAAGACGAATCATCTCGGAATGAACTTGAAGCAATAAAAGAGAGgtaacttcggttttgtgcctttgctaaatactcgctattatattccgacgccatagctaacctataattgattgtgttgcacatttccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA