1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACCGGCTGAAGCAGAGGTTACCAAATTCGACGTAGTGGGTCCTGTCTGTGAATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataaggatatgattctgtttggaagctcaggtaatgtggaatcttatgagtttattgtattcattacag
species | Arabidopsis thaliana |
transcript | AT3G14390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAG GGGAGCTGGTCTGGEST: gi|164229962|gb|EL986697.1|EL986697
genomic: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataag ... ttcattacagGG-AGCTGGTCTGG
EST: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAG GGAGCTGGTCTGGTGGTTCATGACGCTGGTGEST: gi|116455317|gb|EG497909.1|EG497909
genomic: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataag ... ttcattacagGGAGCTGGTCTGGTGGTTCATGACGCTGGTG
EST: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAG GGAGCTGGTCTGGTGGTTCATGACGCTGGTGCATACTGTATGAGCATGGCTEST: gi|86075276|gb|DR371033.1|DR371033
genomic: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataag ... ttcattacagGGAGCTGGTCTGGTGGTTCATGACGCTGGTGCATACTGTATGAGCATGGCT
EST: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAG GGAGCTGGTCTGGTGGTTCATGACGCTGGTGCATACTGTATGAGCATGGCT
genomic: AATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataag ... ttcattacagGGAGCTGGTCTGGTGGTTCATGACGCTGGTGCATACTGTATGAGCATGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGGCTGAAGCAGAGGTTACCAAATTCGACGTAGTGGGTCCTGTCTGTGAATCTGCTGATTTCCTGGGCAAAGACAGAGAGCTTCCCACTCCTCCACAGgtatgataaggatatgattctgtttggaagctcaggtaatgtggaatcttatgagtttattgtattcattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC