1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTACTAGGCTCAATTCTGTCTAACATGTTACTTGTACTTGGCTGCGCCTTCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAgtagaaattcttatccgcttcatgatattctcgttcttcttcttgctattctctaccgtgtttctgagccctattcttttgcaatccag
species | Arabidopsis thaliana |
transcript | AT3G13320.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAA GGAATTGCTACTGTGAATTCAGGAEST: gi|125070626|gb|EL135967.1|EL135967
genomic: TCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAgtagaaattc ... tgcaatccagGGAATTGCTACTGTGAATTCAGGA
EST: AAAAAGACCAAGTCTTTGACAAA GGAATTGCTACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATAEST: gi|124907542|gb|EH981622.1|EH981622
genomic: AAAAAGACCAAGTCTTTGACAAAgtagaaattc ... tgcaatccagGGAATTGCTACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATA
EST: TCTTTTGTGGTGGGCTAGTCTTTTGCCAAAAAGACCAAGTCTTTGACAAA GGAATTGCTACT
genomic: TCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAgtagaaattc ... tgcaatccagGGAATTGCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTAGGCTCAATTCTGTCTAACATGTTACTTGTACTTGGCTGCGCCTTCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAgtagaaattcttatccgcttcatgatattctcgttcttcttcttgctattctctaccgtgtttctgagccctattcttttgcaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG