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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAGgtaataatctagagaatgtcctgaataagagagaggtgtttgggagatgatgcgttgttattaactacaaaatcatggtggttgtgttatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G12860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
TCATCATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAGgtaataatctagagaatgtcctgaataagagagaggtgtttgggagatgatgcgttgttattaactacaaaatcatggtggttgtgt-tatgcag
|| || || || || |||||||||||    |||||||| ||||| |||||||  |||||||||||||||||||||||||| || ||||| |||||  | |||||   |||| | |   || |  ||          | | |    ||||     || ||||    || |            |  | | | |||||
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaat--tcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164111592|gb|ES146101.1|ES146101
EST:     CAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAG                         ATAACAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAAGTAGAGGAAA
genomic: CAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAGgtaataatct ... tgttatgcagATAACAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAAGTAGAGGAAA