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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacctatccaggttctgatttgtttgtgcataccattgtttaacatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G12170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G129987_T01 (Zea mays), 5'ss of exon 6
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgta--------ggcttctctttcttgcaataattct-tttgtctataaaacctatccaggt--tctgatt-tgtttgtgcataccattgtttaacatctgcag----------------------------------------------
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| ||||||| ||| ||||| |  ||||        || | |  || ||     || ||   ||  |  |  |   | | | | ||   ||| || ||  |||  |      |    ||| | | ||                                               
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCCCACCGCTTCAAGGATATAATCGATGGGGCGATTGCTGAAGgtataacacatggttgcagttactgctgttagtttcattcattcagtagtgccagctaagtgccctggttatgcatgtttagttgtctacggaacctgttcactgaaatatccacttctgaaagcacttgccattccttccaataccag

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G090689_T01 (Zea mays), 5'ss of exon 4
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacctatccaggttc--tgatttgtttgtgcataccattgtttaacatctgcag------------------------------------------------------------
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| || |||||||| ||||  |  ||||  |   |  || | |  |    | |  | |  |   |    |   || |||  | ||    ||       | | ||    |  | ||||                                                             
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctgtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctagttatgcaattttagttgtcagtgaaatatctgtttctgaaagcacttgccattcctttttaatatcag

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacct-atccaggttc--tgatttgtttgtgcataccattgtttaacatctgcag------
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| || |||||||| ||||  |  ||||  |   |  || | |  |    |  |   |    |  |  | |   || |||  | ||    ||       | | ||       | ||||       
GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 6
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacctatccaggttc--tgatttgtttgtgcataccattgtttaacatctgcag------------------------------------------------------------
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| || || ||||| ||||  |  ||||  |   |  || | |  |    | |  | |  |   |    |   || |||  | ||    ||       | | ||       | ||||                                                             
GCTTTTCTGCGCAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctgtcgtttgaaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttagttgtcagtgaaatatctgtttctgaaagcacttgccattcctttttaatatcag

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgta-ggcttct-----ctttcttgcaataattcttttgtct--ataaaacctatccaggttctgat--ttgtttgtgcataccattgtttaacatctgcag
||||||||| ||||||||||| ||  |||| ||||| ||||| ||||| ||||| |||||| | |||||||| ||  |||| |||| || ||||     |||||||    |  || |    ||   | | ||  | ||     | |     || | | | | |   |||  | || | |   | 
GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATTCAAGGATATTCTTGATGAGGCAATATCAGCAGgtaagggttctactagctttctttttgtttttttcccttcctgagataagttgtctgatatttagccattctattttcttggaattagtgaaaaccccta-