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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTGCACGTCATATCAGATTCCATCCGCAGgtgttaatcctctctgcctttataaatttcaagcagaatcggagaaagctatatagaaaagaaaatgcttccttttgcatcaaacttatatacagtcaacatgaagttttctttgctgctgtcttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G12100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G30140.1 (Glycine max), 5'ss of exon 6
CCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTGCACGTCATATCAGATTCCATCCGCAGgtgttaatcctctctgcctttataaatttca---agca-gaatcggagaaagctatatagaaaagaaaatgcttccttttgcatcaaacttatatacagtcaacatgaagttttc-tttgctgctgtcttttcag
| |||||||| ||||||||||||||| ||||||| |||| | |||| ||  |  |||||||||| |||||||    || ||   ||  |||||  || |||    ||| |  |  || |    |   ||  || |  ||||| |    |  | ||     | |  | | | || ||  || || | |       ||  || ||||
CTTACAGAAATGCAGAAGATATGAATAATCACTCTGTTTTCCTGCATGTTGTTGCAGATTCCATTCGCAGgtagatatact---tggatttatgtatgtcattgggcatgtgtatgatagtaatgcctatcaatgctaatgcatttcctatcctc-----tgtcca-aattaatattgagcttacatacttcaatggtttctcag

upper sequence: AT3G12100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 6
CCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTGCACGTCATATCAGATTCCATCCGCAGgtgttaa---------tcctctctgcctttataaatttcaagcagaatcggagaaagctatatagaaaagaaaatgcttccttttgcat---caaacttatatacagtca-acatgaagtt---ttctttgctgctgtcttttcag--------------------------------------------------
 |||||| |||||||| |||||||| || ||||| ||||||||||| ||  |  ||||||| || |||||||    |         ||  |||| || | |    |  |   |  |  |  |    || |||||  |  |    ||     | | ||||   || |    ||   || |   |||| | ||   || | |  |||||| ||||                                                     
TCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAGgtacagaagctctctctctcctctcccctcacccttcccctccccatcctcaatgcgccatataacattgttgctggcgtgtgtggcatgttcatatggttaactagacttgcatgtatttatattatcttgtgctgttttttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcag