Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCAACAGCGCCAAGCAGATCTTCCCACAATCCCTTCAACACTGGAGGAAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactccatttggttcatcttcttgaacaattcatgattcggttttatcagctatcactgttgatatcgatctttactttcttgtcgtatatcgagattaactttgttattttccag

Basic information

species Arabidopsis thaliana
transcript AT3G10850.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081524|gb|DR377281.1|DR377281
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|164210234|gb|ES183272.1|ES183272
EST:     TATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: TATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|125035720|gb|EL107989.1|EL107989
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCA
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCA
EST: gi|125295027|gb|EL309112.1|EL309112
EST:     GAGCTCGAAACAAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCG
genomic: GAGCTCGAAAC-AAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: gi|163998726|gb|ES059978.1|ES059978
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAG
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAG
EST: gi|125311440|gb|EL325525.1|EL325525
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCG
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: gi|125219185|gb|EL233270.1|EL233270
EST:     GCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: GCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|19742495|gb|AU227848.1|AU227848
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|164063351|gb|ES172976.1|ES172976
EST:     CAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: CAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|164085423|gb|ES121759.1|ES121759
EST:     CATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAA
genomic: CATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAA
EST: gi|124971557|gb|EL045314.1|EL045314
EST:     CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|86027936|gb|DR323689.1|DR323689
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|125236920|gb|EL251005.1|EL251005
EST:     GATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: GATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|124949748|gb|EL025292.1|EL025292
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCG
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: gi|86076505|gb|DR372262.1|DR372262
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|124789508|gb|EH879187.1|EH879187
EST:     GTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: GTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|164048888|gb|EL981912.1|EL981912
EST:     CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: gi|86078227|gb|DR373984.1|DR373984
EST:     AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG                         GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTCAACAGCGCCAAGCAGATCTTCCCACAATCCCTTCAACACTGGAGGAAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactccatttggttcatcttcttgaacaattcatgattcggttttatcagctatcactgttgatatcgatctttactttcttgtcgtatatcgagattaactttgttattttccag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT