1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagacaccacccaaactccatttcctttctctgtgttggttagttgtaatctgaactttctgaacttgctcacag
species | Arabidopsis thaliana |
transcript | AT3G09740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|116431994|gb|EG474586.1|EG474586
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|86084593|gb|DR380352.1|DR380352
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|125080705|gb|EL142210.1|EL142210
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACAEST: gi|116435937|gb|EG478529.1|EG478529
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACA
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|125004744|gb|EL077013.1|EL077013
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAAEST: gi|124982167|gb|EL054992.1|EL054992
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAA
EST: AAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|125284447|gb|EL298532.1|EL298532
genomic: AAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: ATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATEST: gi|163979610|gb|ES025209.1|ES025209
genomic: ATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
EST: GAGGAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAG GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
genomic: GAGGAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagaca ... ttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGgtagaagacaccacccaaactccatttcctttctctgtgttggttagttgtaatctgaactttctgaacttgctcacag
- - - - - - - - - - - GATGGA