1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttcaataaatttgtgacatgggaatgttagaaaccgttcttagtagcaatgactcacttagttttggtgtcctggtttgcag
species | Arabidopsis thaliana |
transcript | AT3G08590.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATATTG-AGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGG ACAATCCTTGATGCCATAGAACAGGEST: gi|86084815|gb|DR380574.1|DR380574
genomic: ATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttc ... tggtttgcagACAATCCTTGATGCCATAGAACAGG
EST: AGCTGCTGATCGTGCTGTGAGG ACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCAEST: gi|125043798|gb|EL116067.1|EL116067
genomic: AGCTGCTGATCGTGCTGTGAGGgtatgatttc ... tggtttgcagACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCA
EST: CCTGTGAAGCTGCTGATCGTGCTGTGAGG ACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCAEST: gi|124706729|gb|EH798131.1|EH798131
genomic: CCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttc ... tggtttgcagACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCA
EST: CCTGTGAAGCTGCTGATCGTGCTGTGAGG ACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCA
genomic: CCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttc ... tggtttgcagACAATCCTTGATGCCATAGAACAGGTCGGAGGGATATACGTTGTGACTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatgatttcaataaatttgtgacatgggaatgttagaaaccgttcttagtagcaatgactcacttagttttggtgtcctggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT