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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGgtgaacgacatttctccctttttactgtactttcgagtttgcccacaaatcaattcttgcctcatatgttgttggtaattttgtttttcaaaataaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G07950.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07950.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G35620.1 (Glycine max), 5'ss of exon 6
GGTTATACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGgtgaacgacatttctccctt---tttactgtactttcgagtttgcccacaaatcaattcttgcctcatatgttgttggtaatttt----gtttttcaaaataaaatgcag
|| | |||||||| |||   ||||||| |||||||||||| ||||  ||||| |||||||| || ||||| ||||||||||| || |||||  || | |||| |       || |   ||   | || | || | |  ||  |  | |    |   |  |    | | ||  | ||  || ||||     |||||     |    || ||
GGATTTACCTCAGATACTGGCAGAGGAAACCAGAAACAAAACTCAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACTTTTTTCCCTGAGTTTTTAAGgtaagttgtggttttagtttgcctgtaatatattatgaagaattactatctcttg-taatctttttaaataattttcatattttttattattttttttgcttccttgtag

upper sequence: AT3G07950.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv13s0019g04120.t01 (Vitis vinifera), 5'ss of exon 6
GGTTATACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGgtgaacgacatttctccctttttactgtactttcgagtttgcccacaaatcaattcttgcctcatatgttgttggtaattttgtttttcaaaataaaatgcag
|| | |||||||| ||||||||||| | |||||||||||  || |  ||||| ||||||||||| ||||| |||||||| || || |||||| |||| |||| | | |  | | ||   |   |   || ||| ||           |  |   | |||| |  | |  |  ||    | || | ||      | | ||||||
GGATTTACCTCAGATACCTACAGAGAAAACCAGAAACAAGACTTAAGGGTGACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatcta-gtgtttcttgtgaaataataattttgaaaa-----gtgatgctgctgttgctttctcttcttctgacgctgtt-tcttgatggttgacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124892640|gb|EH971542.1|EH971542
EST:     GATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAG                         GCCAGTAATTGACCCCATTG
genomic: GATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGgtgaacgaca ... taaaatgcagGCCAGTAATTGACCCCATTG