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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagtatctggttggttcggcgtattatttccatttcacaattcgtggggtgttctaattctgctctttgtttttgctcaag

Basic information

species Arabidopsis thaliana
transcript AT3G05970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 6
TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaa---gtatctggttggttcggcgtattatttcc----atttcacaattcgtggggtgttctaattctgctctttgtttttgctcaag------
  | ||||  | || || || ||  | || |||||||||||||||||||||||||| ||||| || || | ||| || || ||| ||||||||||||||||||    || | |  ||  |  ||    || ||| |    || ||    || |       |||| |||   |     |   |||||          
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTTCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtacgctgtctataatttatcaggaaatttcttttcttacatgtctaccttggccttaccttctgatttaacagcaagaaattgcttgttctgtag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagt-atct--ggttggttcggcgtattatttcc----atttcacaattcgtggggtgttctaattctgctctttgtttttgctcaag------
  | ||||  | || || || ||  | || |||||||||||||||||||||||||| ||| | || || | ||| || || ||| |||||||||||||||||| ||  |||    ||  |  ||    || ||| |    || ||    || |       |||  |||   |     |    ||||          
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttaccttcagatttaacagcaagaaactgcttgttctgtag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G34650.1 (Glycine max), 5'ss of exon 2
----------------------TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagtatctggttggttcggcgtattatttccatttcacaattcgtggggtgttctaattctgctctttgtttttgctcaag
                        | ||||  | || || || ||  | || |||||||||||||||||||||||||| ||| | || || | ||||   |||   || | ||   |||     ||  ||               ||  |||     |   | | | ||  | | ||| || | | |   |  |  | |      
TTATGGAATCCAAAAGGGCTCTAGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTGCAAgttatattttgtgtacctc-----aaacat---------------taaaattattgctgagctacttgtcagatattccaactgtacatctaatcatggtag---

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 6
TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagtatctggttggttcggcgtattatttccatttcacaattcg-tggggtgttctaattctgctc-tttgtttttgctcaag---------------------------
| ||||||  | || || |||||  | || ||||||||||||||||||||||| || ||| | | ||| ||||| || |||||||| ||||| |||||||||  |||  |||||  |       | | | ||    |      | | | ||     | | | || |   | |  |   ||| ||                            
TGTGTTGGCCTATATTTTATCAACAGACCTGAGTGGCTCATTGTTGATCATGCCTGCTCTGCATTTTCATATGTATCAGTTCCTTTATATGACACTCTTGgttcgtaattggttattgtataaaactttatcggacttttgcctagcttggccaaaccactgctacaaatctactaaagcttaacaaagccttgataattgttgctctgcag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S33_126V6.1 (Physcomitrella patens), 5'ss of exon 9
TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagtatctggttggttcggcgtattatttc----catttcaca-attcgtggg-gtgttctaattctgctctttgtttttgctcaag-----------
  | | ||||| ||  | ||||||||    || ||| ||||    || |  || ||| |  ||||||||||||| ||||||||  ||||||| || ||||||||||  |   ||   ||    ||| |         || |||   |   | |   |||   | ||  || | |   |  |   |  |            
CGTATAGGAATATATATGATCAATCGAGTGGAATGGGTCATCTCAGAACTAGCATGTGCAGCTTATTCTTATGTTTCTGTTCCACTGTATGACACCCTTGgtaagttgcaatttctctcaaaatatgaagataaaatatgtcatgtagatgcgcatgtgccttgatgttgttgtaaatcatactttcacatctggaccag