Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGGAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGgtaacaatattctctttatcttttccttgtttcataacctatgaagaagagtggaaaaaatgcagtttctttcatttgattcatggactggtttgttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G04910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G30210.1 (Glycine max), 5'ss of exon 6
GAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGGAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGgtaacaatattctctttatcttttccttgtttcataacctatgaa--gaagagtggaaaaaatgcagtttctttcatttgattcatggactggtttgttgcag
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GATGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGTATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGgtagggaattggatgccacttgttgtgtttttttaaacctgtgatttgtttattttttgtattatgcaatgtaagcttaagagtatgaatttgattgtcacag
upper sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 6
GAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGGAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGgtaacaatat---tctctttatcttttccttgtttcataacctatgaagaaga-gtggaaaaaatgcagtttctttcatttgattcatggactggtttgttgcag
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GATGATGACGAACCCTCTGAAGATGTCGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGgtagggatttggatgccactttttgttctgtctttttaaagctgtgatttgtttattttttcattatggaatgcaaccttaaaagtatgactttaattgtcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47830850|gb|CK120534.1|CK120534EST: GAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAG GACGTGTCCGAAACATTTACTTCCCATTTGACATTGAGACGGACACCGCAT
genomic: GAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGgtaacaatat ... tttgttgcagGACGTGTCCGAAACATTTACTTCCCATTTGACATTGAGACGGACACCGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGGAGAGATGATGGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGgtaacaatattctctttatcttttccttgtttcataacctatgaagaagagtggaaaaaatgcagtttctttcatttgattcatggactggtttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG