Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTgtaagttatctgtacgtgttttctttgtaagatgagtttaatggttacaatacataataagagaattgggctttttag

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462950|gb|EG505542.1|EG505542
EST:     CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT                         GTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAA
genomic: CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTgtaagttatc ... ggctttttagGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAA
EST: gi|116421231|gb|EG463823.1|EG463823
EST:     CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT                         GTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGA
genomic: CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTgtaagttatc ... ggctttttagGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGA
EST: gi|125106890|gb|EL160279.1|EL160279
EST:     CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT                         GTAACTGTGTTCAAACAGCAAG
genomic: CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTgtaagttatc ... ggctttttagGTAACTGTGTTCAAACAGCAAG
EST: gi|116421229|gb|EG463821.1|EG463821
EST:     CATTCGGATTCTTTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT                         GTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGA
genomic: CATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTgtaagttatc ... ggctttttagGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGA