Sequence
atgc intronic sequence ATGC exonic sequenceGTGGATGCTTTGACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaacgcttattgaatggtgtagctgcacaatttagtcaggcattgatcaaatgcatttcgatgttccag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G01610.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G01610.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G19920.1 (Glycine max), 5'ss of exon 6
GTGGATGCTTTGACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaac--------------gcttattgaatggtgtagctgcacaatttagtca-ggcattgatcaa--atgcattt---cgatgttccag
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ATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatttattagtctttcggaatatgaaaaaacatagccattttaactgataacaacatcgataaatgatacagttatatgaaattgcag
upper sequence: AT3G01610.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0010g02600.t01 (Vitis vinifera), 5'ss of exon 6
GTGGATGCTTTGACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaacgcttattgaatggtgtagctgcaca-atttagtcaggcattgatcaaatgcatttcgatgttccag-----------------------------------------------
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GTGGATGCTTTGACAACAAAGCGTGGGAAGGAAGGGGGATGGGTTGTTGAGCGGCTTCTAAACCAGgt--caaataatacaggaaggaaatacatgaatacacttatgcatacctattcatattatcttttgaattaataatttatattcgatgtggatctcatgtacatcttttgaattaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116484875|gb|EG527467.1|EG527467EST: CAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAG TTTCTTGTTGAGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGA
genomic: CAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaacg ... gatgttccagTTTCTTGTTGAGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGATGCTTTGACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaacgcttattgaatggtgtagctgcacaatttagtcaggcattgatcaaatgcatttcgatgttccag
- - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - AAGAAG