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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCATAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATTGgtcaatatataccactttttttttttttgaatctataatgaatcacgttacgtacagacgttgcattctaacacttttgaatattgtgattttag

Basic information

species Arabidopsis thaliana
transcript AT3G01420.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 6
GGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCATAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATTGgtcaatat----ataccactttttttttttttgaatctataatgaatcacgttacgtacagacgttgcattctaacacttttgaatattgtgattttag--------
|  | ||||||||||| ||| | || ||| |||| ||||| |||||||| ||  |||| || ||||| || ||||||||||| || ||||| || ||||||| |   |    || ||||   ||   ||| |   | | |||  |||    ||| | |   |  ||  ||| | |   ||| ||||| | | |    |         
GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAGAGCTCCTTAAAACTGATACTTTACTTGCAGGCATGCGTGCCAATTGgtaagactcagaatgccacaagttaactttgtatctttttaaaaaat----ttatggatcaaaattatattttca---tttggaatactataaaaaaatcaagcaag

upper sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
GGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCATAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATTGgtcaatatataccactttttttttttttgaatctataatgaatcacgttacgtacagacgttgcattctaacacttttgaatattgtg-attttag-----
|||| ||||| || || ||  | || || ||||| |||||||||||||| ||  |||||||||||||||| ||  ||||||| || ||||| || ||||||| ||||| |||   || |      | |   |   ||    |     ||   |  |   |    |  |  |  | |   | || | |    | ||      
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatat-tacattttctcaagaatctagctagctaggttactcaattcaatggatttgaaaaaaccagaagcatgaaagtactatatggtataaccttt