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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGCACATTGCAGCTGCAACCGAGATTAATTCGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAGgtctgacttttttcttgctccttcttaagtgacacacttgatctagtcgctaaactgcaacacaagactctttaaaaataaaacttgctctgacctctat...

Basic information

species Arabidopsis thaliana
transcript AT2G47510.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480251|gb|EG522843.1|EG522843
EST:     CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAG                         TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
genomic: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
EST: gi|116457541|gb|EG500133.1|EG500133
EST:     CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAG                         TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
genomic: CGAGGCTCATCCCTAGTTTAAAAACTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
EST: gi|164221850|gb|ES060710.1|ES060710
EST:     CTTTGCATAGCACTTTGGAATCTAAG                         TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT
genomic: CTTTGCATAGCACTTTGGAATCTAAGgtctgacttt ... tttctggcagTCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGAT