1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TATCGTTGGATTGCTTATTCATCCATCACCGTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGgtaatgcacacttttctctgaaatgcttatatcagtttttaccgaagttttatgccataatagatgagatatctattgagaatgagttgcttttatataattttcaaag
species | Arabidopsis thaliana |
transcript | AT2G44280.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAG GCTGAGGATAAATCTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTAEST: gi|116400316|gb|EG442908.1|EG442908
genomic: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGgtaatgcaca ... attttcaaagGCTGAGGATAAATCTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTA
EST: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAG GCTGAGGATAAATCTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTAEST: gi|116406007|gb|EG448599.1|EG448599
genomic: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGgtaatgcaca ... attttcaaagGCTGAGGATAAATCTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTA
EST: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAG GCTGAGGATAAATCTAAGTGAAACTAGTCGAGCAAGAATACCATGGTCTTA
genomic: GTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGgtaatgcaca ... attttcaaagGCTGAGGATAAATCTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCGTTGGATTGCTTATTCATCCATCACCGTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGgtaatgcacacttttctctgaaatgcttatatcagtttttaccgaagttttatgccataatagatgagatatctattgagaatgagttgcttttatataattttcaaag
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA