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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGAGTCAGGTTGCGCGCATGCTTGAATCTGATGAACACCCTTTTCACAAGgtactaaaatattcttatgatggtctaaagctgtaacaatatagttatatacatgtttctgtattcataaatgaaacaagattttcgcattttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G42960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 5
CTTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGAGTCAGGTTGCGCGCATGCTTGAATCTGATGAACACCCTTTTCACAAGgtactaaaatattcttatgatggtctaaagctgtaacaatatagttatatacatgtttctgtattcataaatgaaa---caagattttcgcattttggcag
  | ||| | ||||||||||||||||| |||||||| ||  | || | |||||||||||||| | | ||||||||| | || ||| | || || |   |||| |      ||| |  |        | |  | ||||  |     ||   |  ||  ||| |  ||| || |   |      |  |   |  ||||  |  
TCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGACGAATATCCATTCCGAGAGgttccctt-cattatcttatcctctcatatatataacttttactgtaggaatctgaatctcttatcacaatttggagcttttggatgctgtgttttctcca